Current Task


Untitled Post

posted Aug 27, 2012, 11:21 AM by Paul, Hsieh-Fu Tsai

aptamer folding structure and interaction scoring function in molecular dynamics


New Workstation

posted Nov 8, 2011, 4:00 AM by Paul, Hsieh-Fu Tsai   [ updated Nov 17, 2011, 8:57 PM ]

Bulldozer CPU
V4800 graphic card
16GB RAM

Problem:
using engineering graphic card would lose the CUDA capability in Nvidia.

for linux and windows dual system

setup for web serving.
comsol simulation
molecular dynamics

Time plan

posted Aug 30, 2011, 3:01 PM by Paul, Hsieh-Fu Tsai   [ updated Sep 16, 2011, 11:14 AM ]

2011/9/5 Completion of manuscript - done
               Ready to revise and for submission
2011/9/20 inhouse review

2011/10 Complete NSC project

2011/11 Proposal


Graduation Goal

posted Aug 27, 2011, 3:23 AM by Paul, Hsieh-Fu Tsai   [ updated Sep 3, 2011, 5:33 AM ]

  1. Master Thesis in LaTeX
  2. 2 SCI papers
    • currently one in prep
  3. JOVE submission
    1. Fabrication of PMMA system

無標題的文章

posted Aug 13, 2011, 10:31 AM by Paul, Hsieh-Fu Tsai   [ updated Aug 31, 2011, 2:31 PM ]

Labview coming up as priority
:-(


We are working on using Labview for image processing phase contraste cell image for automated thresholding and identification.
We found Dr.Stuhrmann developed a labview program for automated neurite tracking under phase contrast microscopy. We are trying to achieve this also.

Thesis Template

posted Jul 1, 2011, 3:39 PM by Paul, Hsieh-Fu Tsai   [ updated Jul 31, 2011, 1:39 PM ]

Thesis Front Matter
Declaration
Acknowledgments
Table of Contents
List of Figures
List of Tables
Acronyms
Symbols
中文摘要
Abstract
I. MFCII
I.1 Introduction
I.2 Materials and Methods
I.3 Results
I.4 Summary
I.5 Discussion
I.6 Reference
I.7 Publication
II. Electrotaxis of Cancer Cells
II.1 Historical Perspectives
II.2 Introduction
II.3 Materials and Methods
II.4 Results
II.5 Summary
II.6 Discussion
II.7 Reference
II.8 Publication
III.
III.1 Introduction
III.2 Materials and Methods
III.3 Results
III.4 Summary
III.5 Discussion
III.6 Reference
III.7 Publication

Summary
Future Work
Bibliography
Appendix
A Theoretical Studies

need to check creative commons for copyright issues for thesis
->thesis policies in yang ming

Microscope setup

posted Mar 19, 2011, 2:14 PM by Paul, Hsieh-Fu Tsai   [ updated May 28, 2011, 9:07 AM ]

Olympus CKX41 phase contrast microscope - complete

X-Y motorized stage & Z motor from tanlian - complete

controller connected by RS232 through RS232-to-USB adapter -complete

Camera:Canon 60D DSLR - complete

Shutter:Magnetic Sensor Systems SDM950 solenoid driver module + Arduino Uno - in prep

Controller software: Custom-built MATLAB program generously developed by Shih-Wei Peng.


Software skills

posted Feb 12, 2011, 12:36 PM by Paul, Hsieh-Fu Tsai   [ updated May 28, 2011, 9:08 AM ]

Matlab
CFD-ACE+
COMSOL
LabVIEW
GROMACS -> NAMD/VMD
CUDA GPU acceleration computing for molecular dynamics

1-8 of 8