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Matlab

Image Processing toolbox
http://www.mathworks.com/products/image/examples.html?file=/products/demos/shipping/images/ipexrice.html

http://www.mathworks.com/products/image/examples.html?file=/products/demos/shipping/images/ipexcell.html


mmROI
http://www.mathworks.com/matlabcentral/fileexchange/4511


fit ellipse

http://www.mathworks.com/matlabcentral/fileexchange/22423
http://stackoverflow.com/questions/7007531/matlab-find-major-axis-of-binary-area


automated characterization of cell shape changes during amoeboid motility by skeltonization
http://www.biomedcentral.com/1752-0509/4/33

cellsegm - a matlab toolbox for high-throughput 3D cell segmentation


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